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Department of Microbiology, The Medical School, Newcastle upon Tyne NE2 4HH, United Kingdom
* Corresponding author. Mailing address: Department of Microbiology, The Medical School, Framlington Place, Newcastle upon Tyne NE2 4HH, United Kingdom. Fax: 44-91-222-7736.
ABSTRACT
Partial sequences of the 16S rRNA genes of the type strains of nine species of the genus Nocardia were determined following the isolation and cloning of the amplified genes. These sequences were aligned with the sequences of representatives of the genera Corynebacterium, Gordona, Mycobacterium, Rhodococcus, and Tsukamurella, and phylogenetic trees were inferred by using the Fitch-Margoliash and neighbor-joining methods. The genus Nocardia formed a distinct clade that was most closely associated with the genus Rhodococcus. The average level of sequence similarity found among the type strains of the Nocardia species was 97.2 ± 0.7%. Two sublines were recognized within the Nocardia clade; one encompassed Nocardia asteroides and related species, and the other encompassed Nocardia otitidiscaviarum and allied taxa. Separation of the two sublines is based on differences in helix 37–1. The results of isoprenoid quinone analyses provided evidence that nocardiae can be distinguished from all other actinomycete taxa on the basis of their characteristic menaquinone profiles. Nocardiae typically contain hexahydrogenated menaquinones with eight isoprene units in which the two end units are cyclized.
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R. Rivas, P. Garcia-Fraile, A. Peix, P. F. Mateos, E. Martinez-Molina, and E. Velazquez Alcanivorax balearicus sp. nov., isolated from Lake Martel Int J Syst Evol Microbiol, June 1, 2007; 57(6): 1331 - 1335. [Abstract] [Full Text] [PDF]
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Q. Gu, M. Pasciak, H. Luo, A. Gamian, Z. Liu, and Y. Huang Ruania albidiflava gen. nov., sp. nov., a novel member of the suborder Micrococcineae Int J Syst Evol Microbiol, April 1, 2007; 57(4): 809 - 814. [Abstract] [Full Text] [PDF]
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P. Garcia-Fraile, R. Rivas, A. Willems, A. Peix, M. Martens, E. Martinez-Molina, P. F. Mateos, and E. Velazquez Rhizobium cellulosilyticum sp. nov., isolated from sawdust of Populus alba Int J Syst Evol Microbiol, April 1, 2007; 57(4): 844 - 848. [Abstract] [Full Text] [PDF]
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H. Luo, Q. Gu, J. Xie, C. Hu, Z. Liu, and Y. Huang Gordonia shandongensis sp. nov., isolated from soil in China Int J Syst Evol Microbiol, March 1, 2007; 57(3): 605 - 608. [Abstract] [Full Text] [PDF]
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H. Yi, P. Schumann, and J. Chun Demequina aestuarii gen. nov., sp. nov., a novel actinomycete of the suborder Micrococcineae, and reclassification of Cellulomonas fermentans Bagnara et al. 1985 as Actinotalea fermentans gen. nov., comb. nov. Int J Syst Evol Microbiol, January 1, 2007; 57(1): 151 - 156. [Abstract] [Full Text] [PDF]
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R. Rivas, P. Garcia-Fraile, P. F. Mateos, E. Martinez-Molina, and E. Velazquez Paenibacillus cellulosilyticus sp. nov., a cellulolytic and xylanolytic bacterium isolated from the bract phyllosphere of Phoenix dactylifera Int J Syst Evol Microbiol, December 1, 2006; 56(12): 2777 - 2781. [Abstract] [Full Text] [PDF]
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Y.-D. Park, H. Yi, K. S. Baik, C. N. Seong, K. S. Bae, E. Y. Moon, and J. Chun Pseudomonas segetis sp. nov., isolated from soil. Int J Syst Evol Microbiol, November 1, 2006; 56(Pt 11): 2593 - 2595. [Abstract] [Full Text] [PDF]
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A. Valverde, J. M. Igual, A. Peix, E. Cervantes, and E. Velazquez Rhizobium lusitanum sp. nov. a bacterium that nodulates Phaseolus vulgaris. Int J Syst Evol Microbiol, November 1, 2006; 56(Pt 11): 2631 - 2637. [Abstract] [Full Text] [PDF]
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A. Valverde, P. Delvasto, A. Peix, E. Velazquez, I. Santa-Regina, A. Ballester, C. Rodriguez-Barrueco, C. Garcia-Balboa, and J. M. Igual Burkholderia ferrariae sp. nov., isolated from an iron ore in Brazil. Int J Syst Evol Microbiol, October 1, 2006; 56(Pt 10): 2421 - 2425. [Abstract] [Full Text] [PDF]
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K. S. Baik, Y.-D. Park, C. N. Seong, E. M. Kim, K. S. Bae, and J. Chun Glaciecola nitratireducens sp. nov., isolated from seawater. Int J Syst Evol Microbiol, September 1, 2006; 56(Pt 9): 2185 - 2188. [Abstract] [Full Text] [PDF]
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K. S. Baik, C. N. Seong, E. Y. Moon, Y.-D. Park, H. Yi, and J. Chun Hymenobacter rigui sp. nov., isolated from wetland freshwater. Int J Syst Evol Microbiol, September 1, 2006; 56(Pt 9): 2189 - 2192. [Abstract] [Full Text] [PDF]
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Q. Gu, H. Luo, W. Zheng, Z. Liu, and Y. Huang Pseudonocardia oroxyli sp. nov., a novel actinomycete isolated from surface-sterilized Oroxylum indicum root. Int J Syst Evol Microbiol, September 1, 2006; 56(Pt 9): 2193 - 2197. [Abstract] [Full Text] [PDF]
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S. Iida, A. Kageyama, K. Yazawa, N. Uchiyama, T. Toyohara, N. Chohnabayashi, S.-i. Suzuki, F. Nomura, R. M. Kroppenstedt, and Y. Mikami Nocardia exalbida sp. nov., isolated from Japanese patients with nocardiosis Int J Syst Evol Microbiol, June 1, 2006; 56(6): 1193 - 1196. [Abstract] [Full Text] [PDF]
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H. Yi and J. Chun Flavobacterium weaverense sp. nov. and Flavobacterium segetis sp. nov., novel psychrophiles isolated from the Antarctic Int J Syst Evol Microbiol, June 1, 2006; 56(6): 1239 - 1244. [Abstract] [Full Text] [PDF]
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R. Rivas, P. Garcia-Fraile, P. F. Mateos, E. Martinez-Molina, and E. Velazquez Photobacterium halotolerans sp. nov., isolated from Lake Martel in Spain. Int J Syst Evol Microbiol, May 1, 2006; 56(Pt 5): 1067 - 1071. [Abstract] [Full Text] [PDF]
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S. Kim, H. Jeong, S. Kim, and J. Chun Clostridium ganghwense sp. nov., isolated from tidal flat sediment. Int J Syst Evol Microbiol, April 1, 2006; 56(Pt 4): 691 - 693. [Abstract] [Full Text] [PDF]
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Y.-D. Park, K. S. Baik, C. N. Seong, K. S. Bae, S. Kim, and J. Chun Photobacterium ganghwense sp. nov., a halophilic bacterium isolated from sea water. Int J Syst Evol Microbiol, April 1, 2006; 56(Pt 4): 745 - 749. [Abstract] [Full Text] [PDF]
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Y.-D. Park, K. S. Baik, H. Yi, K. S. Bae, and J. Chun Pseudoalteromonas byunsanensis sp. nov., isolated from tidal flat sediment in Korea Int J Syst Evol Microbiol, November 1, 2005; 55(6): 2519 - 2523. [Abstract] [Full Text] [PDF]
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S. Iida, H. Taniguchi, A. Kageyama, K. Yazawa, H. Chibana, S. Murata, F. Nomura, R. M. Kroppenstedt, and Y. Mikami Gordonia otitidis sp. nov., isolated from a patient with external otitis Int J Syst Evol Microbiol, September 1, 2005; 55(5): 1871 - 1876. [Abstract] [Full Text] [PDF]
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Q. Cui, L. Wang, Y. Huang, Z. Liu, and M. Goodfellow Nocardia jiangxiensis sp. nov. and Nocardia miyunensis sp. nov., isolated from acidic soils Int J Syst Evol Microbiol, September 1, 2005; 55(5): 1921 - 1925. [Abstract] [Full Text] [PDF]
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L. He, W. Li, Y. Huang, L. Wang, Z. Liu, B. Lanoot, M. Vancanneyt, and J. Swings Streptomyces jietaisiensis sp. nov., isolated from soil in northern China Int J Syst Evol Microbiol, September 1, 2005; 55(5): 1939 - 1944. [Abstract] [Full Text] [PDF]
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A. Kageyama, K. Yazawa, H. Taniguchi, H. Chibana, K. Nishimura, R. M. Kroppenstedt, and Y. Mikami Nocardia concava sp. nov., isolated from Japanese patients Int J Syst Evol Microbiol, September 1, 2005; 55(5): 2081 - 2083. [Abstract] [Full Text] [PDF]
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P. Xu, W.-J. Li, S.-K. Tang, Y. Jiang, H.-H. Chen, L.-H. Xu, and C.-L. Jiang Nocardia polyresistens sp. nov. Int J Syst Evol Microbiol, July 1, 2005; 55(4): 1465 - 1470. [Abstract] [Full Text] [PDF]
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A. F. Yassin and S. Brenner Nocardia elegans sp. nov., a member of the Nocardia vaccinii clade isolated from sputum Int J Syst Evol Microbiol, July 1, 2005; 55(4): 1505 - 1509. [Abstract] [Full Text] [PDF]
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Y.-D. Park, H. B. Lee, H. Yi, Y. Kim, K. S. Bae, J.-E. Choi, H. S. Jung, and J. Chun Pseudomonas panacis sp. nov., isolated from the surface of rusty roots of Korean ginseng Int J Syst Evol Microbiol, July 1, 2005; 55(4): 1721 - 1724. [Abstract] [Full Text] [PDF]
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A. Peix, O. Berge, R. Rivas, A. Abril, and E. Velazquez Pseudomonas argentinensis sp. nov., a novel yellow pigment-producing bacterial species, isolated from rhizospheric soil in Cordoba, Argentina Int J Syst Evol Microbiol, May 1, 2005; 55(3): 1107 - 1112. [Abstract] [Full Text] [PDF]
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A. Peix, R. Rivas, M. E. Trujillo, M. Vancanneyt, E. Velazquez, and A. Willems Reclassification of Agrobacterium ferrugineum LMG 128 as Hoeflea marina gen. nov., sp. nov. Int J Syst Evol Microbiol, May 1, 2005; 55(3): 1163 - 1166. [Abstract] [Full Text] [PDF]
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H. Yi, H.-M. Oh, J.-H. Lee, S.-J. Kim, and J. Chun Flavobacterium antarcticum sp. nov., a novel psychrotolerant bacterium isolated from the Antarctic Int J Syst Evol Microbiol, March 1, 2005; 55(2): 637 - 641. [Abstract] [Full Text] [PDF]
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K. S. Baik, C. N. Seong, E. M. Kim, H. Yi, K. S. Bae, and J. Chun Hahella ganghwensis sp. nov., isolated from tidal flat sediment Int J Syst Evol Microbiol, March 1, 2005; 55(2): 681 - 684. [Abstract] [Full Text] [PDF]
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R. Rivas, P. F. Mateos, E. Martinez-Molina, and E. Velazquez Paenibacillus phyllosphaerae sp. nov., a xylanolytic bacterium isolated from the phyllosphere of Phoenix dactylifera Int J Syst Evol Microbiol, March 1, 2005; 55(2): 743 - 746. [Abstract] [Full Text] [PDF]
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A. H. Rickard, A. T. Stead, G. A. O'May, S. Lindsay, M. Banner, P. S. Handley, and P. Gilbert Adhaeribacter aquaticus gen. nov., sp. nov., a Gram-negative isolate from a potable water biofilm Int J Syst Evol Microbiol, March 1, 2005; 55(2): 821 - 829. [Abstract] [Full Text] [PDF]
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R. Rivas, S. Sanchez-Marquez, P. F. Mateos, E. Martinez-Molina, and E. Velazquez Martelella mediterranea gen. nov., sp. nov., a novel {alpha}-proteobacterium isolated from a subterranean saline lake Int J Syst Evol Microbiol, March 1, 2005; 55(2): 955 - 959. [Abstract] [Full Text] [PDF]
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 Y. Huang, N. Zhao, L. He, L. Wang, Z. Liu, M. You, and F. Guan Arthrobacter scleromae sp. nov. Isolated from Human Clinical Specimens J. Clin. Microbiol., March 1, 2005; 43(3): 1451 - 1455. [Abstract] [Full Text] [PDF]
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R. Rivas, P. F. Mateos, E. Martinez-Molina, and E. Velazquez Paenibacillus xylanilyticus sp. nov., an airborne xylanolytic bacterium Int J Syst Evol Microbiol, January 1, 2005; 55(1): 405 - 408. [Abstract] [Full Text] [PDF]
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H. Yi, H. I. Yoon, and J. Chun Sejongia antarctica gen. nov., sp. nov. and Sejongia jeonii sp. nov., isolated from the Antarctic Int J Syst Evol Microbiol, January 1, 2005; 55(1): 409 - 416. [Abstract] [Full Text] [PDF]
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A. Kageyama, K. Yazawa, A. Mukai, M. Kinoshita, N. Takata, K. Nishimura, R. M. Kroppenstedt, and Y. Mikami Nocardia shimofusensis sp. nov., isolated from soil, and Nocardia higoensis sp. nov., isolated from a patient with lung nocardiosis in Japan Int J Syst Evol Microbiol, November 1, 2004; 54(6): 1927 - 1931. [Abstract] [Full Text] [PDF]
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A. Kageyama, K. Yazawa, A. Mukai, T. Kohara, K. Nishimura, R. M. Kroppenstedt, and Y. Mikami Nocardia araoensis sp. nov. and Nocardia pneumoniae sp. nov., isolated from patients in Japan Int J Syst Evol Microbiol, November 1, 2004; 54(6): 2025 - 2029. [Abstract] [Full Text] [PDF]
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D.-S. Kim, C.-Y. Bae, J.-J. Jeon, S.-J. Chun, H. W. Oh, S. G. Hong, K.-S. Baek, E. Y. Moon, and K. S. Bae Paenibacillus elgii sp. nov., with broad antimicrobial activity Int J Syst Evol Microbiol, November 1, 2004; 54(6): 2031 - 2035. [Abstract] [Full Text] [PDF]
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Y. Huang, W. Li, L. Wang, B. Lanoot, M. Vancanneyt, C. Rodriguez, Z. Liu, J. Swings, and M. Goodfellow Streptomyces glauciniger sp. nov., a novel mesophilic streptomycete isolated from soil in south China Int J Syst Evol Microbiol, November 1, 2004; 54(6): 2085 - 2089. [Abstract] [Full Text] [PDF]
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R. Rivas, A. Abril, M. E. Trujillo, and E. Velazquez Sphingomonas phyllosphaerae sp. nov., from the phyllosphere of Acacia caven in Argentina Int J Syst Evol Microbiol, November 1, 2004; 54(6): 2147 - 2150. [Abstract] [Full Text] [PDF]
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H. Yi and J. Chun Nocardioides aestuarii sp. nov., isolated from tidal flat sediment Int J Syst Evol Microbiol, November 1, 2004; 54(6): 2151 - 2154. [Abstract] [Full Text] [PDF]
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J. Zhang, Z. Liu, and M. Goodfellow Nocardia xishanensis sp. nov., a novel actinomycete isolated from soil Int J Syst Evol Microbiol, November 1, 2004; 54(6): 2301 - 2305. [Abstract] [Full Text] [PDF]
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H. Jeong, H. Yi, Y. Sekiguchi, M. Muramatsu, Y. Kamagata, and J. Chun Clostridium jejuense sp. nov., isolated from soil Int J Syst Evol Microbiol, September 1, 2004; 54(5): 1465 - 1468. [Abstract] [Full Text] [PDF]
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P. R. Meyers, C. M. Goodwin, J. A. Bennett, B. L. Aken, C. E. Price, and J. M. van Rooyen Streptomyces africanus sp. nov., a novel streptomycete with blue aerial mycelium Int J Syst Evol Microbiol, September 1, 2004; 54(5): 1531 - 1535. [Abstract] [Full Text] [PDF]
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H. Yi, P. Schumann, K. Sohn, and J. Chun Serinicoccus marinus gen. nov., sp. nov., a novel actinomycete with L-ornithine and L-serine in the peptidoglycan Int J Syst Evol Microbiol, September 1, 2004; 54(5): 1585 - 1589. [Abstract] [Full Text] [PDF]
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S.-W. Nam, W. Kim, J. Chun, and M. Goodfellow Tsukamurella pseudospumae sp. nov., a novel actinomycete isolated from activated sludge foam Int J Syst Evol Microbiol, July 1, 2004; 54(4): 1209 - 1212. [Abstract] [Full Text] [PDF]
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H. Yi and J. Chun Nocardioides ganghwensis sp. nov., isolated from tidal flat sediment Int J Syst Evol Microbiol, July 1, 2004; 54(4): 1295 - 1299. [Abstract] [Full Text] [PDF]
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J. H. Sohn, J.-H. Lee, H. Yi, J. Chun, K. S. Bae, T.-Y. Ahn, and S.-J. Kim Kordia algicida gen. nov., sp. nov., an algicidal bacterium isolated from red tide Int J Syst Evol Microbiol, May 1, 2004; 54(3): 675 - 680. [Abstract] [Full Text] [PDF]
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A. Peix, R. Rivas, I. Santa-Regina, P. F. Mateos, E. Martinez-Molina, C. Rodriguez-Barrueco, and E. Velazquez Pseudomonas lutea sp. nov., a novel phosphate-solubilizing bacterium isolated from the rhizosphere of grasses Int J Syst Evol Microbiol, May 1, 2004; 54(3): 847 - 850. [Abstract] [Full Text] [PDF]
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 H. Yamamura, M. Hayakawa, Y. Nakagawa, and Y. Iimura Characterization of Nocardia asteroides Isolates from Different Ecological Habitats on the Basis of Repetitive Extragenic Palindromic-PCR Fingerprinting Appl. Envir. Microbiol., May 1, 2004; 70(5): 3149 - 3151. [Abstract] [Full Text] [PDF]
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Y. Huang, M. Pasciak, Z. Liu, Q. Xie, and A. Gamian Amycolatopsis palatopharyngis sp. nov., a potentially pathogenic actinomycete isolated from a human clinical source Int J Syst Evol Microbiol, March 1, 2004; 54(2): 359 - 363. [Abstract] [Full Text] [PDF]
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H. Yi, K. S. Bae, and J. Chun Thalassomonas ganghwensis sp. nov., isolated from tidal flat sediment Int J Syst Evol Microbiol, March 1, 2004; 54(2): 377 - 380. [Abstract] [Full Text] [PDF]
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R. Rivas, M. E. Trujillo, M. Sanchez, P. F. Mateos, E. Martinez-Molina, and E. Velazquez Microbacterium ulmi sp. nov., a xylanolytic, phosphate-solubilizing bacterium isolated from sawdust of Ulmus nigra Int J Syst Evol Microbiol, March 1, 2004; 54(2): 513 - 517. [Abstract] [Full Text] [PDF]
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R. Rivas, M. E. Trujillo, P. Schumann, R. M. Kroppenstedt, M. Sanchez, P. F. Mateos, E. Martinez-Molina, and E. Velazquez Xylanibacterium ulmi gen. nov., sp. nov., a novel xylanolytic member of the family Promicromonosporaceae Int J Syst Evol Microbiol, March 1, 2004; 54(2): 557 - 561. [Abstract] [Full Text] [PDF]
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A. Kageyama, K. Yazawa, K. Nishimura, and Y. Mikami Nocardia inohanensis sp. nov., Nocardia yamanashiensis sp. nov. and Nocardia niigatensis sp. nov., isolated from clinical specimens Int J Syst Evol Microbiol, March 1, 2004; 54(2): 563 - 569. [Abstract] [Full Text] [PDF]
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H. Yi, K. S. Bae, and J. Chun Aestuariibacter salexigens gen. nov., sp. nov. and Aestuariibacter halophilus sp. nov., isolated from tidal flat sediment, and emended description of Alteromonas macleodii Int J Syst Evol Microbiol, March 1, 2004; 54(2): 571 - 576. [Abstract] [Full Text] [PDF]
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D. Saintpierre-Bonaccio, L. A. Maldonado, H. Amir, R. Pineau, and M. Goodfellow Nocardia neocaledoniensis sp. nov., a novel actinomycete isolated from a New-Caledonian brown hypermagnesian ultramafic soil Int J Syst Evol Microbiol, March 1, 2004; 54(2): 599 - 603. [Abstract] [Full Text] [PDF]
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A. Kageyama, N. Poonwan, K. Yazawa, Y. Mikami, and K. Nishimura Nocardia asiatica sp. nov., isolated from patients with nocardiosis in Japan and clinical specimens from Thailand Int J Syst Evol Microbiol, January 1, 2004; 54(1): 125 - 130. [Abstract] [Full Text] [PDF]
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H. Yi and J. Chun Hongiella mannitolivorans gen. nov., sp. nov., Hongiella halophila sp. nov. and Hongiella ornithinivorans sp. nov., isolated from tidal flat sediment Int J Syst Evol Microbiol, January 1, 2004; 54(1): 157 - 162. [Abstract] [Full Text] [PDF]
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J. Song, S.-C. Lee, J.-W. Kang, H.-J. Baek, and J.-W. Suh Phylogenetic analysis of Streptomyces spp. isolated from potato scab lesions in Korea on the basis of 16S rRNA gene and 16S-23S rDNA internally transcribed spacer sequences Int J Syst Evol Microbiol, January 1, 2004; 54(1): 203 - 209. [Abstract] [Full Text] [PDF]
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A. Peix, R. Rivas, P. F. Mateos, E. Martinez-Molina, C. Rodriguez-Barrueco, and E. Velazquez Pseudomonas rhizosphaerae sp. nov., a novel species that actively solubilizes phosphate in vitro Int J Syst Evol Microbiol, November 1, 2003; 53(6): 2067 - 2072. [Abstract] [Full Text] [PDF]
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U. Behrendt, A. Ulrich, and P. Schumann Fluorescent pseudomonads associated with the phyllosphere of grasses; Pseudomonas trivialis sp. nov., Pseudomonas poae sp. nov. and Pseudomonas congelans sp. nov. Int J Syst Evol Microbiol, September 1, 2003; 53(5): 1461 - 1469. [Abstract] [Full Text] [PDF]
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A. F. Yassin, B. Straubler, P. Schumann, and K. P. Schaal Nocardia puris sp. nov. Int J Syst Evol Microbiol, September 1, 2003; 53(5): 1595 - 1599. [Abstract] [Full Text] [PDF]
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